Please email me (hmarx[at]unm.edu) if you would like access to .pdf versions.
†undergraduate co-author; *graduate student co-author
Published
2024
23. Feng K*, Walker JF, Marx HE, Goncalves DJP, Yang Y, Brockington SF, Moore MF, Rabeler RK, Smith SA. The link between ancient whole-genome duplications and cold adaptations in the Caryophyllaceae. 2024. American Journal of Botany e16350. https://doi.org/10.1002/ajb2.16350
2023
22. Ernst A*, Barak R, Glasenhardt M, Kramer A, Larkin D, Marx HE, Poulton K, Hipp A. Dominant species establishment may influence invasion resistance more than phylogenetic or functional diversity. 2023. Journal of Applied Ecology 60:2652–2664. https://doi.org/10.1111/1365-2664.14534
2022
21. Bach W, Kreft H, Craven D, König C, Schrader J, Taylor A, Dawson W, Essl F, Lenzner B, Marx HE, Meyer C, Pergl J, Pysek P, van Kleunen M, Winter M, Weigelt P. Phylogenetic composition of native island floras influences naturalized alien species richness. 2022. Ecography e06227 https://doi.org/10.1111/ecog.06227
20. Ernst A*, Barak R, Hipp A, Kramer A, Marx HE & Larkin A. 2022. The invasion paradox dissolves when using phylogenetic and temporal perspectives. Journal of Ecology 110: 443– 456. https://doi.org/10.1111/1365-2745.13812
19. Figueroa H*, Marx HE, Beatriz de Souza Cortez M*, Grady C, Engle-Wrye NJ*, Beach J, Stewart A, Folk R, Soltis D, Soltis P & Smith S. 2022. Contrasting patterns of phylogenetic diversity and alpine specialization across the alpine flora of the American mountain range system. Alpine Botany 132: 107–122. https://doi.org/10.1007/s00035-021-00261-y
18. Morales-Briones DF, Gehrke B, Huang CH, Liston A, Ma H, Marx HE, Tank DC & Yang Y. 2022. Analysis of paralogs in target enrichment data pinpoints multiple ancient polyploidy events in Alchemilla s.l. (Rosaceae). Systematic Biology 71(1): 190–207. https://doi.org/10.1093/sysbio/syab032
2021
17. Marx HE, Carboni M, Douzet R, Perrier C, Delbart F, Thuiller W, Lavergne S, Tank D. 2021. Can functional genomic diversity provide novel insights into mechanisms of community assembly? A pilot-study from an invaded alpine streambed. Ecology and Evolution 11: 12075– 12091. https://doi.org/10.1002/ece3.7973
16. Simon ADF*, Marx HE, Starzomski BM. 2021. Phylogenetic restriction of plant invasion in drought-stressed environments: implications for insect-pollinated plant communities in water-limited ecosystems. Ecology and Evolution 11: 10042– 10053. https://doi.org/10.1002/ece3.7776
15. Marx HE, Jorgensen SA*, Wisely E*, Li Z*, Dlugosch KM & Barker MS. 2021. Pilot RNA-seq data from 24 species of vascular plants at Harvard Forest. Applications in Plant Sciences 9(2): e11409. https://doi.org/10.1002/aps3.11409
2020
14. Marx HE, Scheidt S, Barker MS & Dlugosch KM. 2020. TagSeq for gene expression in non-model plants: A pilot study at the Santa Rita Experimental Range NEON core site. Applications in Plant Sciences 8(11): e11398. https://doi.org/10.1002/aps3.11398
13. Baniaga AE*, Marx HE, Arrigo N & Barker MS. 2020. Polyploid plants have faster rates of multivariate climatic niche evolution than their diploid relatives. Ecology Letters 23: 68-78. https://doi.org/10.1111/ele.13402
2019
12. One Thousand Plant Transcriptomes Initiative. 2019. One thousand plant transcriptomes and the phylogenomics of green plants. Nature 574: 679–685. https://doi.org/10.1038/s41586-019-1693-2
11. Daijiang L, Trotta L, Marx HE, Allen JM, Sun M, Soltis DE, Soltis PS, Guralnick RP & Baiser B. 2019. For comparing phylogenetic diversity among communities, go ahead and use synthesis phylogenies. Ecology. 100(9):e02788. https://doi.org/10.1002/ecy.2788
10. Marx HE, Richards M†, Johnson GM* & Tank DC. 2019. Increasing phylogenetic stochasticity at high elevations on summits across a remote North American wilderness. American Journal of Botany 106(7): 958-970. https://doi.org/10.1002/ajb2.1328 GitHub
2018
9. Lu-Irving P, Marx HE & Dlugosch K. 2018. Leveraging contemporary species invasions to test phylogenetic hypotheses of trait evolution. Current Opinion in Plant Biology 42: 95–102. https://doi.org/10.1016/j.pbi.2018.04.011
8. Landis JB, Soltis DE, Li Z, Marx HE, Barker MS, Tank DC & Soltis PS. 2018. Impact of whole-genome duplication events on diversification rates in angiosperms. American Journal of Botany – Special Issue: Using and Navigating the Plant Tree of Life 105(3): 348–363. https://doi.org/10.1002/ajb2.1060
2017
7. Marx HE, Dentant C, Renaud J, Delunel R, Tank DC & Lavergne S. 2017. Riders in the sky (islands): using a mega-phylogenetic approach to understand plant species distribution and coexistence at the altitudinal limits of angiosperm plant life. Journal of Biogeography 44: 2618– 2630. https://doi.org/10.1111/jbi.13073 GitHub
6. Yang Y, Moore MJ, Brockington SF, Timoneda-Monfort A, Feng T, Marx HE, Walker JF & Smith SA. 2017. An efficient field and laboratory workflow for plant phylotranscriptomic projects. Applications in Plant Sciences 5(3): 1600128. https://doi.org/10.3732/apps.1600128
2016
5. Marx HE, Giblin DE, Dunwiddie PW & Tank DC. 2016. Deconstructing Darwin’s Naturalization Hypothesis in the San Juan Islands using community phylogenetics and functional traits. Diversity and Distributions 22: 318–331. https://doi.org/10.1111/ddi.12401GitHub
2012
4. Goldberg CS, Tank DC, Uribe-Convers S, Bosworth WR, Marx HE & Waits LP. 2012. Species designation of the Bruneau Dune tiger beetle (Cicindela waynei)is supported by phylogenetic analysis of mitochondrial DNA sequence data. Conservation Genetics 13: 373–380. https://doi.org/10.1007/s10592-011-0295-9
2010
3. Marx HE, O’Leary N, Yuan YW, Lu-Irving P, Tank DC, Múlgura ME & Olmstead RG. 2010. A molecular phylogeny and classification of Verbenaceae. American Journal of Botany 97(10): 1647–1663. https://doi.org/10.3732/ajb.1000144
2. Yuan YW, Liu C, Marx HE & Olmstead RG. 2010. An empirical demonstration of using PPR (pentatricopeptide repeat) genes as phylogenetic tools: phylogeny of Verbenaceae and the Verbena complex. Molecular Phylogenetics and Evolution 54: 23–35. https://doi.org/10.1016/j.ympev.2009.08.029
2009
1. Yuan YW, Liu C, Marx HE & Olmstead RG. 2009. The PPR (pentatricopeptide repeat) gene family, a tremendous resource for plant phylogenetic studies. New Phytologist 182: 272–283. https://doi.org/10.1111/j.1469-8137.2008.02739.x
In Review or Revision (pre-prints available upon request)
Johnson GM*, Marx HE & Tank DC. A Floristic inventory of the high Idaho batholith ecoregion in the mountains of central Idaho, U.S.A.